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Intron Name: Anas_platyrhynchos_platyrhynchos_13_9554523_9554956_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9554523 - 9554956

Intron Length:

434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATGCAT

U12 Branch Point Sequence:

TGACCTTCCACT

Flanking Amino Acid:

RYAAVRTLNKVAMKHPSAVT

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

72.5

37.3

Major BPS

54.9

0.12

1.4

39.8

Major PPT

81.7

0.71

0.7

31.9

Minor 5ss

31.7

-2.1

3.6

47.8

47.9

Minor BPS

47.9

-0

67.56

42.8

Associated Gene:

Gene:

COPG1

Ensembl Gene ID:

ENSAPLG00000002838

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030315

9547205 - 9566566

19362

ENSAPLT00000002947

9548695 - 9566336

17642