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Intron Name: Anas_platyrhynchos_platyrhynchos_13_9557908_9559547_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9557908 - 9559547

Intron Length:

1640

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGTC

5'SS Class:

strong_major

3'SS Sequence:

GCTTTCTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

TCGTGCTGAAGC

Flanking Amino Acid:

MLPSILVLLKRCVMDDDNEV

Intron Amino Acid Position:

509

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

75.7

34.4

Major BPS

0.42

1.1

57.3

41.7

Major PPT

82.4

0.73

0.8

80.3

31.7

Minor 5ss

30.4

-2.2

3.5

42.4

45.1

Minor BPS

-0.2

2.2

58.56

46.4

Associated Gene:

Gene:

COPG1

Ensembl Gene ID:

ENSAPLG00000002838

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030315

9547205 - 9566566

19362

ENSAPLT00000002947

9548695 - 9566336

17642