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Intron Name: Anas_platyrhynchos_platyrhynchos_13_9559882_9560289_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9559882 - 9560289

Intron Length:

408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTGTTTGTATCT

Flanking Amino Acid:

ATAPIVEQRAENVPVAVVKQ

Intron Amino Acid Position:

586

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

38.2

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

88.9

0.87

0.6

85.2

22.1

Minor 5ss

-2.2

3.3

45.6

Minor BPS

49.1

0.01

2.2

74.5

43.2

Associated Gene:

Gene:

COPG1

Ensembl Gene ID:

ENSAPLG00000002838

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030315

9547205 - 9566566

19362

ENSAPLT00000002947

9548695 - 9566336

17642