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Intron Name: Anas_platyrhynchos_platyrhynchos_13_9560877_9561877_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9560877 - 9561877

Intron Length:

1001

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCCGTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAA

U12 Branch Point Sequence:

AGAGCTTCAAGC

Flanking Amino Acid:

HTFVSHMVFQFDCTNTLNDQ

Intron Amino Acid Position:

657

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

72.2

39.5

Major BPS

60.4

0.26

1.3

65.6

41.4

Major PPT

71.6

0.49

0.9

68.6

31.8

Minor 5ss

29.2

-2.4

2.9

36.2

40.8

Minor BPS

-0.4

1.8

50.42

40.2

Associated Gene:

Gene:

COPG1

Ensembl Gene ID:

ENSAPLG00000002838

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030315

9547205 - 9566566

19362

ENSAPLT00000002947

9548695 - 9566336

17642