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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9567122_9568549_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9567122 - 9568549
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCCCC
5'SS Class:
major
3'SS Sequence:
GCTTGTCCGTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GGCGCACTGACA
Flanking Amino Acid:
VLLSRKHLQQDADSSERVLM
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.3
52.5
43.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
56.3
0.14
1.2
60.6
40.7
Minor 5ss
43.3
-0.7
3.2
60.3
44.3
Minor BPS
42.9
-0.5
2
50.07
40.6

Associated Gene:

Gene:
HMCES
Ensembl Gene ID:
ENSAPLG00000004071
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004170
9566939 - 9572786
5848