Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9571870_9571971_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9571870 - 9571971

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTGTGCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTCAG

U12 Branch Point Sequence:

AGCGCCGTGACC

Flanking Amino Acid:

ASKDLSFIHHRMPAILDGEE

Intron Amino Acid Position:

164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.2

1.14

0.7

80.3

38.1

Major BPS

48.8

-0

1.5

57.1

41.8

Major PPT

67.2

0.39

0.9

60.7

40.3

Minor 5ss

21.7

-3.3

3.8

30.5

43.3

Minor BPS

-0.2

2.1

56.35

42.5

Associated Gene:

Gene:

HMCES

Ensembl Gene ID:

ENSAPLG00000004071

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004170

9566939 - 9572786

5848