Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9572165_9572579_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9572165 - 9572579

Intron Length:

415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

GGCATCTCACTC

Flanking Amino Acid:

LAPIELGAKKEVKATASSKM

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.84

0.9

74.9

35.3

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

86.7

0.82

0.7

81.5

30.6

Minor 5ss

33.5

-1.9

3.4

47.6

Minor BPS

42.3

-0.6

1.7

44.21

37.7

Associated Gene:

Gene:

HMCES

Ensembl Gene ID:

ENSAPLG00000004071

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004170

9566939 - 9572786

5848