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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9574874_9574994_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9574874 - 9574994
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
TGTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCGTTTTAACG
Flanking Amino Acid:
GGAERKRAAAAPGPSVRGAA
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.6
0.64
0.8
73.3
31.6
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
58.7
0.13
1.5
58.79
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020965
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042515
9574244 - 9576409
2166