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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9617674_9619221_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9617674 - 9619221
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTCACCTGACT
Flanking Amino Acid:
EVRETKVKGKSGKFFSVKLP
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
80.3
0.68
0.7
73
31.9
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
52.2
0.15
1.9
74.98
41.4

Associated Gene:

Gene:
RPN1
Ensembl Gene ID:
ENSAPLG00000004411
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004542
9616673 - 9624721
8049