About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9620241_9621198_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9620241 - 9621198
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCATT
5'SS Class:
major
3'SS Sequence:
GCTTCTCTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
GGTGCACTGACC
Flanking Amino Acid:
SGISSVKSFKTILPAAAQDV
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
73.9
42.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
74.3
0.55
0.8
69.3
31.3
Minor 5ss
40.3
-1.1
3.2
57.7
46.7
Minor BPS
45.5
-0.3
2
57.73
40.6

Associated Gene:

Gene:
RPN1
Ensembl Gene ID:
ENSAPLG00000004411
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004542
9616673 - 9624721
8049