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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9621810_9622075_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9621810 - 9622075
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
CTGGCTTTATCC
Flanking Amino Acid:
TVKIVLPEGAKNIHVDSPYE
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
75.5
0.57
0.9
69
36.1
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
52.8
0.07
1.8
61.2
44.9

Associated Gene:

Gene:
RPN1
Ensembl Gene ID:
ENSAPLG00000004411
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004542
9616673 - 9624721
8049