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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_965584_968315_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
965584 - 968315
Intron Length:
2732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
AAGCAATAAACA
Flanking Amino Acid:
MEKSTAVLIQGG
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
71.1
0.47
0.7
62.2
28.8
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
43
-0.5
2
51.1
39.5

Associated Gene:

Gene:
WNT5A
Ensembl Gene ID:
ENSAPLG00000012181
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012682
965578 - 1090212
124635