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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_968450_969620_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
968450 - 969620
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTTATTAATA
Flanking Amino Acid:
TQVVIEASSWWSLGMNPMNP
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.2
0.86
0.8
85
28.6
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
68
0.56
1.5
75.76
35.9

Associated Gene:

Gene:
WNT5A
Ensembl Gene ID:
ENSAPLG00000012181
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012682
965578 - 1090212
124635