About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_975032_976536_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
975032 - 976536
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
CTGCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCTCCTTTCTC
Flanking Amino Acid:
NLHNNEAGRRTVYNLADVAC
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
63.5
41.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80.7
0.69
0.8
72.4
37.7
Minor 5ss
36.8
-1.5
2.9
42.7
37.7
Minor BPS
44.5
-0.4
3.6
70.11
42

Associated Gene:

Gene:
WNT5A
Ensembl Gene ID:
ENSAPLG00000012181
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012682
965578 - 1090212
124635