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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_976711_1088534_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
976711 - 1088534
Intron Length:
111824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAGC
5'SS Class:
major
3'SS Sequence:
CTATTTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTGTTACTAACA
Flanking Amino Acid:
KLNSRGKLVQPRAILFQNTP
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
40.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
75.7
0.58
0.9
71.7
38
Minor 5ss
33.6
-1.9
3
43
44.2
Minor BPS
55.9
0.18
1.9
72.98
38.7

Associated Gene:

Gene:
WNT5A
Ensembl Gene ID:
ENSAPLG00000012181
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012682
965578 - 1090212
124635