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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9768064_9768169_R

Intron Information:

Intron Rank:
133023
Intron Class:
major
Intron Phase:
Intron Coordinates:
9768064 - 9768169
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTGTG
5'SS Class:
major
3'SS Sequence:
CTTGCTTTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATCAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
64.9
41.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
63.4
0.3
1.2
63.4
42.1
Minor 5ss
36.5
-1.5
3.2
39.9
46.1
Minor BPS
53.7
0.19
1.8
72.03
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018798
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027364
9767118 - 9768463
1346