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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9802031_9803157_R

Intron Information:

Intron Rank:
148459
Intron Class:
major
Intron Phase:
Intron Coordinates:
9802031 - 9803157
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGACC
5'SS Class:
major
3'SS Sequence:
CTTGACTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTACTCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
65.3
37.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.8
0.69
0.9
77
36.9
Minor 5ss
31.5
-2.1
3.4
43.2
44.2
Minor BPS
74.1
0.84
1.1
85.28
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027248
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022079
9801938 - 9805906
3969