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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9803523_9805500_R

Intron Information:

Intron Rank:
148460
Intron Class:
major
Intron Phase:
Intron Coordinates:
9803523 - 9805500
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTCTCCACATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.8
0.67
0.9
76.8
32
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
45.6
-0.2
2
64.75
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027248
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022079
9801938 - 9805906
3969