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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9875719_9915415_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9875719 - 9915415
Intron Length:
39697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGGTTTTTACA
Flanking Amino Acid:
QSGKFKIRIPDGLKPETKTL
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
85.3
0.79
0.9
79.9
37.7
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
53.4
0.1
1.7
65.78
41.1

Associated Gene:

Gene:
EEFSEC
Ensembl Gene ID:
ENSAPLG00000006745
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046973
9874438 - 9997288
122851