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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10004744_10004839_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10004744 - 10004839
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGAC
5'SS Class:
major
3'SS Sequence:
GTGCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
CCGCTCACACCC
Flanking Amino Acid:
TYVCNTPDGTERGDFLALDL
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
63.9
36.4
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
69.1
0.43
0.9
62.3
34.7
Minor 5ss
24.6
-2.9
3.4
32.4
42.7
Minor BPS
37.8
-0.9
1.8
39.98
39.6

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024838
9997384 - 10010678
13295
ENSAPLT00000046103
10004635 - 10008961
4327
ENSAPLT00000021566
10004635 - 10008611
3977
ENSAPLT00000041026
9997654 - 10010678
13025
ENSAPLT00000017334
9999399 - 10011597
12199
ENSAPLT00000040039
10004635 - 10008211
3577
ENSAPLT00000037032
9997654 - 10010017
12364