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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10005135_10005229_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10005135 - 10005229
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAC|GCCAGGTAT
5'SS Class:
weak_major
3'SS Sequence:
TAGGTTTGGGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TGGCCCTCACCC
Flanking Amino Acid:
GVDGELYRAHILQSVTGLLA
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
2
60
45
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
45.7
-0.2
1.8
50.1
47.7
Minor 5ss
24.9
-2.9
4.1
37.4
40.7
Minor BPS
49.3
-0
1.9
61.12
43.7

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041026
9997654 - 10010678
13025
ENSAPLT00000037032
9997654 - 10010017
12364
ENSAPLT00000024838
9997384 - 10010678
13295