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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10005145_10005224_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10005145 - 10005224
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAAAC
U12 Branch Point Sequence:
TGGCCCTCACCC
Flanking Amino Acid:
VDGELYRAHARFGEILQSVT
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
55
0.13
1
62.6
30.8
Major PPT
74.2
0.54
0.7
69.2
24.8
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
49.3
-0
1.9
61.12
43.7

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046103
10004635 - 10008961
4327
ENSAPLT00000040039
10004635 - 10008211
3577
ENSAPLT00000021566
10004635 - 10008611
3977