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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10005699_10005846_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10005699 - 10005846
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCAGCGA
5'SS Class:
major
3'SS Sequence:
CCACCACACGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCACAC
U12 Branch Point Sequence:
ACTCCCACCACA
Flanking Amino Acid:
DQESSNPGERRFEKMVGGLY
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.1
50.1
42.3
Major BPS
48.6
-0
1
54.6
31.2
Major PPT
58
0.18
0.9
50.8
31.6
Minor 5ss
23
-3.1
3.2
29.9
43
Minor BPS
43.6
-0.5
2.1
56.71
42.1

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037032
9997654 - 10010017
12364
ENSAPLT00000024838
9997384 - 10010678
13295
ENSAPLT00000046103
10004635 - 10008961
4327
ENSAPLT00000021566
10004635 - 10008611
3977
ENSAPLT00000041026
9997654 - 10010678
13025
ENSAPLT00000017334
9999399 - 10011597
12199
ENSAPLT00000040039
10004635 - 10008211
3577