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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10006031_10006126_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10006031 - 10006126
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
CCCACCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCCCCCCAAACC
Flanking Amino Acid:
GKPCEIALVMGTGTNSCFMA
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43.4
Major BPS
50
0
1.2
61.8
35.9
Major PPT
64
0.32
0.8
53.6
30.9
Minor 5ss
33.8
-1.8
2.8
34.8
41.4
Minor BPS
45.1
-0.3
2
52.17
45.2

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021566
10004635 - 10008611
3977
ENSAPLT00000041026
9997654 - 10010678
13025
ENSAPLT00000017334
9999399 - 10011597
12199
ENSAPLT00000040039
10004635 - 10008211
3577
ENSAPLT00000037032
9997654 - 10010017
12364
ENSAPLT00000024838
9997384 - 10010678
13295
ENSAPLT00000046103
10004635 - 10008961
4327