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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10006297_10006332_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10006297 - 10006332
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCTGGAGGT
5'SS Class:
major
3'SS Sequence:
TGTGGGGTGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTGCCAG
U12 Branch Point Sequence:
CAAGCTGGAGGT
Flanking Amino Acid:
VVQLLQAAINKQGSFIALLN
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.3
60.8
40.9
Major BPS
38.3
-0.7
1.7
43.9
48.6
Major PPT
55.7
0.13
1.2
46.1
49.8
Minor 5ss
18.5
-3.6
4
30.4
36.8
Minor BPS
32.4
-1.2
2.1
42.02
41.2

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017334
9999399 - 10011597
12199