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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10006627_10006730_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10006627 - 10006730
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
GCTGCCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
AGCTGCTCACCC
Flanking Amino Acid:
ADKLQGTGEVLFDFVAQCVQ
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
51.6
45.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
76.2
0.59
0.9
68.9
37
Minor 5ss
27.7
-2.6
3.6
34.6
43.7
Minor BPS
44
-0.4
2.1
53.52
44.1

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040039
10004635 - 10008211
3577
ENSAPLT00000021566
10004635 - 10008611
3977
ENSAPLT00000046103
10004635 - 10008961
4327