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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10007469_10007560_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10007469 - 10007560
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAGG
5'SS Class:
major
3'SS Sequence:
TCCCTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
CCTCCCTCCACG
Flanking Amino Acid:
SAPCGRDAEGRAPGSFQFGH
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.4
45.8
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
70.4
0.46
0.8
65.3
29.3
Minor 5ss
24.8
-2.9
3.1
30.1
43.2
Minor BPS
47
-0.3
2.1
52.75
47.6

Associated Gene:

Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046103
10004635 - 10008961
4327
ENSAPLT00000040039
10004635 - 10008211
3577
ENSAPLT00000021566
10004635 - 10008611
3977