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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10008612_10008897_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10008612 - 10008897
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAGC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGGTGCTGACGT
Flanking Amino Acid:
MLELSESKSAGGDAGTPLAG
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.9
40.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
82.5
0.73
0.7
76.4
25.6
Minor 5ss
27
-2.6
3
34.1
41.6
Minor BPS
40
-0.6
2.2
54
47

Associated Gene:

Gene:
UIMC1
Ensembl Gene ID:
ENSAPLG00000017474
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039260
10007355 - 10040410
33056
ENSAPLT00000019484
10007867 - 10043463
35597
Gene:
HK3
Ensembl Gene ID:
ENSAPLG00000023983
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046103
10004635 - 10008961
4327