Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10008962_10010432_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10008962 - 10010432

Intron Length:

1471

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

AGCGCTGTGACG

Flanking Amino Acid:

QGTRRLRSAKVVGRHERGLL

Intron Amino Acid Position:

707

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

67.9

37.4

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

75.8

0.58

0.9

72.5

32.1

Minor 5ss

24.1

-3

3.3

42.8

Minor BPS

-0.6

2.1

44.58

42.1

Associated Gene:

Gene:

UIMC1

Ensembl Gene ID:

ENSAPLG00000017474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039260

10007355 - 10040410

33056

ENSAPLT00000019484

10007867 - 10043463

35597