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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10010554_10012020_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10010554 - 10012020
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCGTGCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CGAATCCTAACG
Flanking Amino Acid:
DSGPVASDTDKCEKCYLCKS
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
66.6
0.37
1.1
61.7
40
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
47.6
-0.3
1.8
50.31
43.2

Associated Gene:

Gene:
UIMC1
Ensembl Gene ID:
ENSAPLG00000017474
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039260
10007355 - 10040410
33056
ENSAPLT00000019484
10007867 - 10043463
35597