Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10012100_10017500_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10012100 - 10017500

Intron Length:

5401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGCCAA

5'SS Class:

major

3'SS Sequence:

GTTTTGCCTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGGTAAC

U12 Branch Point Sequence:

TGGCAGGTAACC

Flanking Amino Acid:

VGEEPAEDSPVLTRRQREAR

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.3

57.7

Major BPS

50.5

0.01

1.3

53.1

40.5

Major PPT

79.7

0.67

0.9

70.3

41.3

Minor 5ss

38.7

-1.3

2.9

47.5

Minor BPS

39.9

-0.7

2.6

53.47

43.8

Associated Gene:

Gene:

UIMC1

Ensembl Gene ID:

ENSAPLG00000017474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039260

10007355 - 10040410

33056

ENSAPLT00000019484

10007867 - 10043463

35597