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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10020826_10021643_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10020826 - 10021643
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGTGCTGACGT
Flanking Amino Acid:
SAEEEISVCPETQPSPLEAA
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
41.9
-0.5
2.3
59.86
49.3

Associated Gene:

Gene:
UIMC1
Ensembl Gene ID:
ENSAPLG00000017474
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039260
10007355 - 10040410
33056
ENSAPLT00000019484
10007867 - 10043463
35597