About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10021733_10024173_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10021733 - 10024173
Intron Length:
2441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTTTTGAACA
Flanking Amino Acid:
GDGEPMRAAQSISVLTPLGS
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69.5
0.44
1.1
66.1
43.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
63.3
0.41
1.4
69.95
36.4

Associated Gene:

Gene:
UIMC1
Ensembl Gene ID:
ENSAPLG00000017474
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039260
10007355 - 10040410
33056
ENSAPLT00000019484
10007867 - 10043463
35597