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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10044754_10045259_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10044754 - 10045259
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCCAG
U12 Branch Point Sequence:
GCCGCCCCAGCC
Flanking Amino Acid:
SESQRLAHYQSKKHANKVRR
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
38.3
-0.7
1.7
43.9
48.6
Major PPT
75.7
0.58
0.8
69.7
31.1
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
39.3
-0.8
2
43.87
43.6

Associated Gene:

Gene:
ZNF346
Ensembl Gene ID:
ENSAPLG00000002968
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003005
10044503 - 10051458
6956