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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10046497_10047188_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10046497 - 10047188
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
GTTCACCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAG
U12 Branch Point Sequence:
AGTTCTGTGACT
Flanking Amino Acid:
NVKQQSPKAEEVTPPQKHPA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
58.6
0.21
1.5
57.1
41.8
Major PPT
74.4
0.55
0.9
66.6
35.2
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
57.7
0.32
2
77.88
38.7

Associated Gene:

Gene:
ZNF346
Ensembl Gene ID:
ENSAPLG00000002968
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003005
10044503 - 10051458
6956