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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10058237_10058804_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10058237 - 10058804
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
CGCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
AGCCCCCTGACC
Flanking Amino Acid:
GRHGDGALSPEAGKMRPLWH
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
45.5
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
72.8
0.51
0.9
65
36.3
Minor 5ss
34.7
-1.7
3.6
50.9
45.8
Minor BPS
50.3
-0
1.7
59.61
39

Associated Gene:

Gene:
FGFR4
Ensembl Gene ID:
ENSAPLG00000018284
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025139
10057928 - 10068428
10501