Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10058404_10058804_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

10058404 - 10058804

Intron Length:

401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAACGCCG

5'SS Class:

major

3'SS Sequence:

CGCTGCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

AGCCCCCTGACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.3

49.2

46.9

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

72.8

0.51

0.9

36.3

Minor 5ss

37.1

-1.5

3.3

49.3

46.5

Minor BPS

50.3

-0

1.7

59.61

Associated Gene:

Gene:

FGFR4

Ensembl Gene ID:

ENSAPLG00000018284

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046882

10057792 - 10068428

10637

ENSAPLT00000018976

10057792 - 10068428

10637