About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10058899_10060209_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10058899 - 10060209
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CCTCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAA
U12 Branch Point Sequence:
TCCCTCACAACC
Flanking Amino Acid:
AASRRGAMETDSLASGDDDE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
56.2
0.15
1
64.6
32.2
Major PPT
71.8
0.49
0.7
65.2
23.5
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
46.7
-0.2
1.8
56.53
41.9

Associated Gene:

Gene:
FGFR4
Ensembl Gene ID:
ENSAPLG00000018284
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046882
10057792 - 10068428
10637