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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10060761_10060969_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10060761 - 10060969
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
GTCCTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAT
U12 Branch Point Sequence:
ATGTGGGTGATG
Flanking Amino Acid:
IRYSYLLDVLERSPHRPILQ
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.5
39.1
Major BPS
49.3
-0
1.5
42.8
49.4
Major PPT
71.7
0.49
1
64.4
41.4
Minor 5ss
26
-2.8
3.4
30.5
42.8
Minor BPS
35.7
-1.2
2.7
43.48
43.2

Associated Gene:

Gene:
FGFR4
Ensembl Gene ID:
ENSAPLG00000018284
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025139
10057928 - 10068428
10501
ENSAPLT00000018976
10057792 - 10068428
10637
ENSAPLT00000046882
10057792 - 10068428
10637