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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10061672_10061843_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10061672 - 10061843
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
GGCAGCTGAGGT
Flanking Amino Acid:
KLSKFPLIRQFSLDSSSSGK
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
74.9
0.56
0.8
69
31.5
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
36.6
-0.9
2.1
47.12
44.4

Associated Gene:

Gene:
FGFR4
Ensembl Gene ID:
ENSAPLG00000018284
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046882
10057792 - 10068428
10637
ENSAPLT00000025139
10057928 - 10068428
10501
ENSAPLT00000018976
10057792 - 10068428
10637