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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10062216_10062331_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10062216 - 10062331
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAC
U12 Branch Point Sequence:
GGCACGGTGACA
Flanking Amino Acid:
AVTVAVKMLKDNATDKDLAD
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
46
-0.2
1.3
52.4
43.3
Major PPT
66.5
0.37
0.8
56.8
33.5
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
39.5
-0.8
2.5
48.43
42

Associated Gene:

Gene:
FGFR4
Ensembl Gene ID:
ENSAPLG00000018284
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046882
10057792 - 10068428
10637
ENSAPLT00000025139
10057928 - 10068428
10501
ENSAPLT00000018976
10057792 - 10068428
10637