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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10062744_10062942_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10062744 - 10062942
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
TCCCTCCCGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCACATCT
Flanking Amino Acid:
RGMEYLESKRCIHRDLAARN
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
55.2
49
Major BPS
72.7
0.56
1
75
30.1
Major PPT
69.3
0.43
0.9
65.3
30.5
Minor 5ss
32.5
-2
3.6
38.2
46.8
Minor BPS
42
-0.5
2
57.99
44.8

Associated Gene:

Gene:
FGFR4
Ensembl Gene ID:
ENSAPLG00000018284
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025139
10057928 - 10068428
10501
ENSAPLT00000018976
10057792 - 10068428
10637
ENSAPLT00000046882
10057792 - 10068428
10637