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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10103742_10103888_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10103742 - 10103888
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCGCTACGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTTTTCACCA
Flanking Amino Acid:
SKKVQEQLQKVNSVARSEFE
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.2
30.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
61.7
0.26
1
55.5
40.1
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
48.7
-0.1
1.8
60.95
39.7

Associated Gene:

Gene:
NSD1
Ensembl Gene ID:
ENSAPLG00000003144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003227
10092676 - 10132019
39344