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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10105581_10106633_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10105581 - 10106633
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TGTGTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTCTGCTGAATT
Flanking Amino Acid:
KKEEWTPPKKGTGPSESDSS
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
79
0.72
1
69
38.9
Major PPT
76.1
0.59
0.9
70.4
40.3
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
54.5
0.22
1.9
72.16
45.3

Associated Gene:

Gene:
NSD1
Ensembl Gene ID:
ENSAPLG00000003144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003227
10092676 - 10132019
39344