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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10106704_10107496_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10106704 - 10107496
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCACATCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTCTTGAAT
Flanking Amino Acid:
SPAHFSDLGEAPEKVLEKQR
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
68.9
0.43
1
58.9
41.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
77.4
0.95
1.3
91.96
30.1

Associated Gene:

Gene:
NSD1
Ensembl Gene ID:
ENSAPLG00000003144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003227
10092676 - 10132019
39344