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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10107616_10111663_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10107616 - 10111663
Intron Length:
4048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTCTTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAATTTTGAATT
Flanking Amino Acid:
EGLGETPHSEGETSGHGTAT
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.7
44.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
46.5
-0.4
3.1
64.7
46.6
Minor BPS
62.2
0.46
1.3
74.42
36.3

Associated Gene:

Gene:
NSD1
Ensembl Gene ID:
ENSAPLG00000003144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003227
10092676 - 10132019
39344