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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10111808_10112290_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10111808 - 10112290
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTCC
5'SS Class:
major
3'SS Sequence:
CCTTCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
TTGCTCAGAGCT
Flanking Amino Acid:
GAALKENVCQICEKPGELLL
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60.3
39.6
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
74.6
0.55
0.7
65.6
30.4
Minor 5ss
36.7
-1.5
3.5
50.9
45.8
Minor BPS
45.6
-0.2
1.9
67.29
43

Associated Gene:

Gene:
NSD1
Ensembl Gene ID:
ENSAPLG00000003144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003227
10092676 - 10132019
39344