Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10112415_10112922_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10112415 - 10112922

Intron Length:

508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGCAG

5'SS Class:

major

3'SS Sequence:

GCTCTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGTAT

U12 Branch Point Sequence:

TTCTGTATGACT

Flanking Amino Acid:

GKFICNECSTGVHTCFVCKS

Intron Amino Acid Position:

1035

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.2

0.43

1.1

44.7

Major BPS

58.9

0.22

1.5

59.6

46.8

Major PPT

81.3

0.71

0.8

72.9

37.4

Minor 5ss

28.4

-2.5

3.5

37.7

47.1

Minor BPS

0.08

2.1

75.61

41.6

Associated Gene:

Gene:

NSD1

Ensembl Gene ID:

ENSAPLG00000003144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003227

10092676 - 10132019

39344