Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10114665_10115029_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10114665 - 10115029

Intron Length:

365

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGATGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

CTTTGATAAATT

Flanking Amino Acid:

NVSWCFVCSEGGSLLCCESC

Intron Amino Acid Position:

1162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.5

39.2

Major BPS

0.85

0.9

39.9

Major PPT

88.1

0.86

0.6

84.1

23.9

Minor 5ss

31.9

-2.1

38.5

46.6

Minor BPS

47.7

-0

2.3

72.41

Associated Gene:

Gene:

NSD1

Ensembl Gene ID:

ENSAPLG00000003144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003227

10092676 - 10132019

39344