About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10115679_10116252_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10115679 - 10116252
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCCTCATAACA
Flanking Amino Acid:
GKGVDGIYKKALHEAAVRFE
Intron Amino Acid Position:
1283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
73.5
0.53
0.9
70
35.4
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
62.4
0.39
1.6
73.45
38.1

Associated Gene:

Gene:
NSD1
Ensembl Gene ID:
ENSAPLG00000003144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003227
10092676 - 10132019
39344